Open sourcing NY’s Forensic Statistical Tool for review
https://github.com/propublica/nyc-dna-software/blob/master/README.md
Tools
Overview on programming life
Article ‘Program the living: when computer meets genetics’ (originally in french) https://translate.google.com/translate?sl=auto&tl=en&js=y&prev=_t&hl=en&ie=UTF-8&u=http%3A%2F%2Frue89.nouvelobs.com%2F2015%2F01%2F02%2Fprogrammer-vivant-quand-linformatique-rencontre-genetique-256680&edit-text=
Biology as the next hardware
I really liked this article, especially: In the middle, between DNA read-in and DNA read-out, is a computing layer that’s seen enormous growth in the […]
J. Craig Venter Institute to Establish a Genome Center for Infectious Diseases
Influenza Research Database (IRD), Virus Pathogen Resource (ViPR): Bioinformatics Resource Centers (BRC) by J. Craig Venter Institute (JCVI) J. Craig Venter Institute Awarded 5 year, […]
Controlled vocabularies for microbial virulence factors.
T. Korves and M. E. Colosimo, “Controlled vocabularies for microbial virulence factors.,” Trends Microbiol., vol. 17, no. 7, pp. 279–85, Jul. 2009. Abstract Knowledge about […]
Virulence Searcher: a tool for searching raw genome sequences from bacterial genomes for putative virulence factors
A. Underwood, A. Mulder, S. Gharbia, and J. Green, “Virulence Searcher: a tool for searching raw genome sequences from bacterial genomes for putative virulence factors,” […]
Towards pathogenomics: a web-based resource for pathogenicity islands.
S. H. Yoon, Y.-K. Park, S. Lee, D. Choi, T. K. Oh, C.-G. Hur, and J. F. Kim, “Towards pathogenomics: a web-based resource for pathogenicity […]
MvirDB–a microbial database of protein toxins, virulence factors and antibiotic resistance genes for bio-defence applications.
C. E. Zhou, J. Smith, M. Lam, a Zemla, M. D. Dyer, and T. Slezak, “MvirDB–a microbial database of protein toxins, virulence factors and antibiotic […]
BioCreative: Critical Assessment of Information Extraction in Biology
http://www.biocreative.org/ About The BioCreAtIvE (Critical Assessment of Information Extraction systems in Biology) challenge evaluation consists of a community-wide effort for evaluating text mining and information […]
Patterns of Pathogenesis
L. Hirschman, A. Morgan, and M. Colosimo, “Patterns of Pathogenesis MITRE Sponsored Research Final Report,” 2006. Abstract This MSR has focused on the development […]